IL_8R3V_039

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8R3V|1|72|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_039 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1007

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8R3V|1|72|C|1043
8R3V|1|72|C|1044
8R3V|1|72|C|1045
8R3V|1|72|A|1046
8R3V|1|72|G|1047
8R3V|1|72|A|1048
8R3V|1|72|C|1049
8R3V|1|72|A|1050
8R3V|1|72|G|1051
*
8R3V|1|72|U|1108
8R3V|1|72|C|1109
8R3V|1|72|G|1110
8R3V|1|72|A|1111
8R3V|1|72|G|1112

Current chains

Chain 72

23S ribosomal RNA

Nearby chains