IL_8R3V_109

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

8R3V|1|72|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_109 not in the Motif Atlas

Homologous match to IL_5J7L_352

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

8R3V|1|72|G|2838
8R3V|1|72|G|2839
*
8R3V|1|72|U|2878
8R3V|1|72|A|2879
8R3V|1|72|C|2880

Current chains

Chain 72

23S ribosomal RNA

Nearby chains