IL_8R3V_133

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_133 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.121

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8R3V|1|A1|A|371
8R3V|1|A1|C|372
8R3V|1|A1|A|373
8R3V|1|A1|A|374
8R3V|1|A1|U|375
*
8R3V|1|A1|A|389
8R3V|1|A1|U|390

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain P1

30S ribosomal protein S16

Chain i2

50S ribosomal protein L9