IL_8R3V_230

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8R3V|1|A2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_230 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.2149

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8R3V|1|A2|G|933
8R3V|1|A2|C|934
8R3V|1|A2|A|935
*
8R3V|1|A2|U|1380
8R3V|1|A2|U|1381
8R3V|1|A2|C|1382
8R3V|1|A2|C|1383
8R3V|1|A2|C|1384

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain G2

30S ribosomal protein S7

Chain I2

Small ribosomal subunit protein uS9

Chain W

Transfer RNA; tRNA

Chain X2

Transfer RNA; tRNA