IL_8R3V_232

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_232 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.2168

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8R3V|1|A2|G|993
8R3V|1|A2|A|994
8R3V|1|A2|C|995
8R3V|1|A2|A|996
8R3V|1|A2|U|997
*
8R3V|1|A2|A|1044
8R3V|1|A2|C|1045

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain N2

Small ribosomal subunit protein uS14