IL_8R55_011

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8R55|1|A|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1427

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8R55|1|A|G|146
8R55|1|A|G|147
8R55|1|A|A|148
8R55|1|A|U|149
8R55|1|A|A|150
8R55|1|A|A|151
8R55|1|A|C|152
*
8R55|1|A|G|167
8R55|1|A|C|168
8R55|1|A|U|169
8R55|1|A|A|170
8R55|1|A|A|171
8R55|1|A|U|172
8R55|1|A|A|173
8R55|1|A|C|174

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain T

30S ribosomal protein S20