IL_8R55_028

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UUAA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_028 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.2501

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8R55|1|A|U|602
8R55|1|A|U|603
8R55|1|A|A|604
8R55|1|A|A|605
*
8R55|1|A|U|653
8R55|1|A|G|654
8R55|1|A|G|655

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17