IL_8R55_033

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGC*GUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_033 not in the Motif Atlas

Geometric match to IL_5FJC_003

Geometric discrepancy: 0.3106

The information below is about IL_5FJC_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8R55|1|A|U|666
8R55|1|A|G|667
8R55|1|A|C|668
*
8R55|1|A|G|755
8R55|1|A|U|756
8R55|1|A|A|757
8R55|1|A|A|758

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain O

30S ribosomal protein S15