IL_8R55_038

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_038 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0905

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8R55|1|A|C|788
8R55|1|A|G|789
8R55|1|A|A|790
8R55|1|A|A|791
8R55|1|A|C|792
*
8R55|1|A|G|808
8R55|1|A|G|809
8R55|1|A|U|810
8R55|1|A|A|811
8R55|1|A|G|812

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain K

30S ribosomal protein S11

Chain X

Large subunit ribosomal RNA; LSU rRNA