IL_8R55_085

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_085 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.1694

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8R55|1|X|C|608
8R55|1|X|C|609
8R55|1|X|U|610
*
8R55|1|X|A|619
8R55|1|X|U|620
8R55|1|X|G|621

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L15

Chain n

Large ribosomal subunit protein bL20

Chain o

Large ribosomal subunit protein bL21