IL_8R55_087

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_087 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.1534

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8R55|1|X|U|650
8R55|1|X|U|651
8R55|1|X|A|652
8R55|1|X|A|653
8R55|1|X|G|654
*
8R55|1|X|C|664
8R55|1|X|G|665
8R55|1|X|G|666
8R55|1|X|A|667
8R55|1|X|G|668

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L15