IL_8R55_089

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8R55|1|X|G|848, 8R55|1|X|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_089 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1059

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8R55|1|X|G|721
8R55|1|X|A|722
8R55|1|X|A|723
8R55|1|X|A|724
8R55|1|X|C|725
*
8R55|1|X|G|846
8R55|1|X|A|847
8R55|1|X|G|848
8R55|1|X|A|849
8R55|1|X|U|850
8R55|1|X|A|851
8R55|1|X|G|852
8R55|1|X|C|853

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L15