IL_8R55_121

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

8R55|1|X|G|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_121 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1504

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8R55|1|X|G|1358
8R55|1|X|G|1359
8R55|1|X|A|1360
8R55|1|X|A|1361
8R55|1|X|G|1362
*
8R55|1|X|C|1370
8R55|1|X|G|1371
8R55|1|X|C|1372

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain r

Large ribosomal subunit protein uL22