IL_8R55_138

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_138 not in the Motif Atlas

Geometric match to IL_4V9F_008

Geometric discrepancy: 0.1869

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8R55|1|X|G|1711
8R55|1|X|G|1712
8R55|1|X|A|1713
8R55|1|X|A|1714
*
8R55|1|X|U|2022
8R55|1|X|C|2023

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain f

50S ribosomal protein L14