IL_8R55_174

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_174 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1093

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8R55|1|X|U|2681
8R55|1|X|U|2682
8R55|1|X|A|2683
8R55|1|X|G|2684
8R55|1|X|U|2685
8R55|1|X|A|2686
8R55|1|X|C|2687
*
8R55|1|X|G|2692
8R55|1|X|G|2693
8R55|1|X|A|2694
8R55|1|X|C|2695
8R55|1|X|C|2696
8R55|1|X|G|2697

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL6