IL_8R8M_025
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8R8M|1|A|A|532, 8R8M|1|A|U|534, 8R8M|1|A|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R8M_025 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1489
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8R8M|1|A|G|515
8R8M|1|A|PSU|516
8R8M|1|A|G|517
8R8M|1|A|C|518
8R8M|1|A|C|519
8R8M|1|A|A|520
8R8M|1|A|G|521
*
8R8M|1|A|C|528
8R8M|1|A|G|529
8R8M|1|A|G|530
8R8M|1|A|U|531
8R8M|1|A|A|532
8R8M|1|A|A|533
8R8M|1|A|U|534
8R8M|1|A|A|535
8R8M|1|A|C|536
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain Y
- Transfer RNA; tRNA
Coloring options: