IL_8R8M_035
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 8R8M|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R8M_035 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.0485
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8R8M|1|A|U|684
8R8M|1|A|G|685
8R8M|1|A|U|686
8R8M|1|A|A|687
8R8M|1|A|G|688
*
8R8M|1|A|C|699
8R8M|1|A|G|700
8R8M|1|A|U|701
8R8M|1|A|A|702
8R8M|1|A|G|703
8R8M|1|A|A|704
8R8M|1|A|G|705
8R8M|1|A|A|706
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: