3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAAG*CGGACC
Length
10 nucleotides
Bulged bases
8R8M|1|A|A|1257, 8R8M|1|A|A|1280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_055 not in the Motif Atlas
Homologous match to IL_5J7L_055
Geometric discrepancy: 0.1493
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

8R8M|1|A|G|1255
8R8M|1|A|A|1256
8R8M|1|A|A|1257
8R8M|1|A|G|1258
*
8R8M|1|A|C|1277
8R8M|1|A|G|1278
8R8M|1|A|G|1279
8R8M|1|A|A|1280
8R8M|1|A|C|1281
8R8M|1|A|C|1282

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
Small ribosomal subunit protein uS3
Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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