IL_8R8M_057

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_057 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0809

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8R8M|1|A|C|1303
8R8M|1|A|G|1304
8R8M|1|A|G|1305
8R8M|1|A|A|1306
8R8M|1|A|U|1307
8R8M|1|A|U|1308
*
8R8M|1|A|A|1329
8R8M|1|A|U|1330
8R8M|1|A|G|1331
8R8M|1|A|A|1332
8R8M|1|A|A|1333
8R8M|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13