IL_8R8M_100

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8R8M|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_100 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0451

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8R8M|1|a|U|1018
8R8M|1|a|U|1019
8R8M|1|a|A|1020
8R8M|1|a|A|1021
8R8M|1|a|G|1022
8R8M|1|a|U|1023
8R8M|1|a|G|1024
*
8R8M|1|a|C|1140
8R8M|1|a|U|1141
8R8M|1|a|A|1142
8R8M|1|a|A|1143
8R8M|1|a|A|1144

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13