IL_8R8M_131

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8R8M|1|a|A|1801, 8R8M|1|a|C|1816, 8R8M|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_131 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0378

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8R8M|1|a|U|1798
8R8M|1|a|G|1799
8R8M|1|a|C|1800
8R8M|1|a|A|1801
8R8M|1|a|A|1802
8R8M|1|a|A|1803
8R8M|1|a|C|1804
*
8R8M|1|a|G|1813
8R8M|1|a|G|1814
8R8M|1|a|A|1815
8R8M|1|a|C|1816
8R8M|1|a|G|1817
8R8M|1|a|U|1818
8R8M|1|a|A|1819
8R8M|1|a|U|1820
8R8M|1|a|A|1821

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2