IL_8R8M_160

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8R8M|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R8M_160 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0551

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8R8M|1|a|C|2636
8R8M|1|a|U|2637
8R8M|1|a|G|2638
8R8M|1|a|A|2639
8R8M|1|a|G|2640
*
8R8M|1|a|C|2774
8R8M|1|a|G|2775
8R8M|1|a|A|2776
8R8M|1|a|G|2777
8R8M|1|a|A|2778
8R8M|1|a|U|2779
8R8M|1|a|G|2780
8R8M|1|a|A|2781
8R8M|1|a|G|2782

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13