3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UCACU*AAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8R8M_162 not in the Motif Atlas
Homologous match to IL_5J7L_347
Geometric discrepancy: 0.0615
The information below is about IL_5J7L_347
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

8R8M|1|a|U|2680
8R8M|1|a|C|2681
8R8M|1|a|A|2682
8R8M|1|a|C|2683
8R8M|1|a|U|2684
*
8R8M|1|a|A|2725
8R8M|1|a|A|2726
8R8M|1|a|A|2727

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain j
Large ribosomal subunit protein uL14
Chain m
Large ribosomal subunit protein bL17
Chain o
Large ribosomal subunit protein bL19

Coloring options:


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