IL_8R8M_163
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8R8M|1|a|U|2689, 8R8M|1|a|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R8M_163 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0629
- The information below is about IL_5J7L_348
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8R8M|1|a|U|2687
8R8M|1|a|G|2688
8R8M|1|a|U|2689
8R8M|1|a|U|2690
8R8M|1|a|C|2691
*
8R8M|1|a|G|2718
8R8M|1|a|G|2719
8R8M|1|a|U|2720
8R8M|1|a|A|2721
8R8M|1|a|G|2722
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: