IL_8RCM_072

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8RCM|1|72|A|1801, 8RCM|1|72|C|1816, 8RCM|1|72|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCM_072 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.081

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8RCM|1|72|U|1798
8RCM|1|72|G|1799
8RCM|1|72|C|1800
8RCM|1|72|A|1801
8RCM|1|72|A|1802
8RCM|1|72|A|1803
8RCM|1|72|C|1804
*
8RCM|1|72|G|1813
8RCM|1|72|G|1814
8RCM|1|72|A|1815
8RCM|1|72|C|1816
8RCM|1|72|G|1817
8RCM|1|72|U|1818
8RCM|1|72|A|1819
8RCM|1|72|U|1820
8RCM|1|72|A|1821

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain b2

50S ribosomal protein L2