IL_8RCT_075

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8RCT|1|72|A|1938, 8RCT|1|72|U|1944, 8RCT|1|72|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RCT_075 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1619

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8RCT|1|72|C|1934
8RCT|1|72|G|1935
8RCT|1|72|A|1936
8RCT|1|72|A|1937
8RCT|1|72|A|1938
8RCT|1|72|5MU|1939
8RCT|1|72|U|1940
8RCT|1|72|C|1941
8RCT|1|72|C|1942
8RCT|1|72|U|1943
8RCT|1|72|U|1944
8RCT|1|72|G|1945
*
8RCT|1|72|C|1961
8RCT|1|72|5MC|1962
8RCT|1|72|U|1963
8RCT|1|72|G|1964

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain b2

50S ribosomal protein L2