IL_8RD8_025
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UGAAAG*CCGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_025 not in the Motif Atlas
- Homologous match to IL_7A0S_018
- Geometric discrepancy: 0.1108
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_29495.1
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RD8|1|Z2|U|688
8RD8|1|Z2|G|689
8RD8|1|Z2|A|690
8RD8|1|Z2|A|691
8RD8|1|Z2|A|692
8RD8|1|Z2|G|693
*
8RD8|1|Z2|C|708
8RD8|1|Z2|C|709
8RD8|1|Z2|G|710
8RD8|1|Z2|G|711
8RD8|1|Z2|A|712
8RD8|1|Z2|G|713
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
Coloring options: