IL_8RD8_046

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

8RD8|1|Z2|U|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_046 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1912

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8RD8|1|Z2|G|1043
8RD8|1|Z2|U|1044
8RD8|1|Z2|U|1045
8RD8|1|Z2|G|1046
*
8RD8|1|Z2|C|1060
8RD8|1|Z2|A|1061
8RD8|1|Z2|U|1062
8RD8|1|Z2|C|1063

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein uL16