IL_8RD8_134
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_134 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1102
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8RD8|1|iN|C|623
8RD8|1|iN|G|624
8RD8|1|iN|U|625
8RD8|1|iN|A|626
8RD8|1|iN|G|627
*
8RD8|1|iN|U|801
8RD8|1|iN|G|802
8RD8|1|iN|A|803
8RD8|1|iN|G|804
8RD8|1|iN|G|805
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain BQ
- Small ribosomal subunit protein uS8
- Chain L6
- Small ribosomal subunit protein uS12
- Chain OL
- Small ribosomal subunit protein uS15
- Chain QZ
- Small ribosomal subunit protein uS17
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