IL_8RD8_142

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8RD8|1|iN|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RD8_142 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0917

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8RD8|1|iN|U|728
8RD8|1|iN|G|729
8RD8|1|iN|U|730
8RD8|1|iN|A|731
8RD8|1|iN|G|732
*
8RD8|1|iN|C|743
8RD8|1|iN|G|744
8RD8|1|iN|U|745
8RD8|1|iN|A|746
8RD8|1|iN|G|747
8RD8|1|iN|A|748
8RD8|1|iN|G|749
8RD8|1|iN|A|750

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain Z2

Large subunit ribosomal RNA; LSU rRNA