IL_8RD8_170
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAGAAG*CCACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RD8_170 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.0868
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RD8|1|iN|C|1475
8RD8|1|iN|A|1476
8RD8|1|iN|G|1477
8RD8|1|iN|A|1478
8RD8|1|iN|A|1479
8RD8|1|iN|G|1480
*
8RD8|1|iN|C|1511
8RD8|1|iN|C|1512
8RD8|1|iN|A|1513
8RD8|1|iN|C|1514
8RD8|1|iN|G|1515
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Je
- Large ribosomal subunit protein uL14
- Chain Oi
- Large ribosomal subunit protein bL19
- Chain To
- Small ribosomal subunit protein bS20
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
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