IL_8RDV_002

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGCACC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_002 not in the Motif Atlas

Homologous match to IL_5J7L_356

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_356

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.4

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8RDV|1|D8|G|21
8RDV|1|D8|G|22
8RDV|1|D8|C|23
8RDV|1|D8|A|24
8RDV|1|D8|C|25
8RDV|1|D8|C|26
*
8RDV|1|D8|G|54
8RDV|1|D8|A|55
8RDV|1|D8|A|56
8RDV|1|D8|A|57
8RDV|1|D8|C|58

Current chains

Chain D8

5S rRNA

Nearby chains

Chain F7

Large ribosomal subunit protein uL5

Chain Nc

Large ribosomal subunit protein uL18