IL_8RDV_004
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_004 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.0858
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8RDV|1|D8|A|32
8RDV|1|D8|U|33
8RDV|1|D8|C|34
8RDV|1|D8|C|35
8RDV|1|D8|C|36
*
8RDV|1|D8|G|42
8RDV|1|D8|A|43
8RDV|1|D8|A|44
8RDV|1|D8|C|45
8RDV|1|D8|U|46
Current chains
- Chain D8
- 5S rRNA
Nearby chains
- Chain F7
- Large ribosomal subunit protein uL5
- Chain Nc
- Large ribosomal subunit protein uL18
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
- Chain fJ
- Large ribosomal subunit protein bL31B
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