IL_8RDV_015

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_015 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1819

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

8RDV|1|Z2|U|280
8RDV|1|Z2|A|281
8RDV|1|Z2|G|282
*
8RDV|1|Z2|C|330
8RDV|1|Z2|G|331
8RDV|1|Z2|A|332
8RDV|1|Z2|A|333
8RDV|1|Z2|A|334

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain TI

Large ribosomal subunit protein uL24