IL_8RDV_021

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAAC*GUGACAGC

Length

13 nucleotides

Bulged bases

8RDV|1|Z2|G|786, 8RDV|1|Z2|G|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_021 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1082

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|G|659
8RDV|1|Z2|A|660
8RDV|1|Z2|A|661
8RDV|1|Z2|A|662
8RDV|1|Z2|C|663
*
8RDV|1|Z2|G|784
8RDV|1|Z2|U|785
8RDV|1|Z2|G|786
8RDV|1|Z2|A|787
8RDV|1|Z2|C|788
8RDV|1|Z2|A|789
8RDV|1|Z2|G|790
8RDV|1|Z2|C|791

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain Kd

Large ribosomal subunit protein uL15