IL_8RDV_027

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|G|761, 8RDV|1|Z2|A|773, 8RDV|1|Z2|A|774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_027 not in the Motif Atlas

Homologous match to IL_7A0S_021

Geometric discrepancy: 0.126

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8RDV|1|Z2|G|760
8RDV|1|Z2|G|761
8RDV|1|Z2|G|762
*
8RDV|1|Z2|U|772
8RDV|1|Z2|A|773
8RDV|1|Z2|A|774
8RDV|1|Z2|U|775
8RDV|1|Z2|C|776

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Cl

Large ribosomal subunit protein uL2

Chain RF

Large ribosomal subunit protein uL22