IL_8RDV_031

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_031 not in the Motif Atlas

Homologous match to IL_5J7L_269

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8RDV|1|Z2|C|835
8RDV|1|Z2|C|836
*
8RDV|1|Z2|G|911
8RDV|1|Z2|A|912
8RDV|1|Z2|G|913

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain YW

Large ribosomal subunit protein uL30