IL_8RDV_036

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

8RDV|1|Z2|C|979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_036 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1007

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8RDV|1|Z2|C|978
8RDV|1|Z2|C|979
8RDV|1|Z2|A|980
*
8RDV|1|Z2|U|1144
8RDV|1|Z2|G|1145

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain IX

Large ribosomal subunit protein uL13

Chain PO

Large ribosomal subunit protein bL20

Chain Qb

Large ribosomal subunit protein bL21

Chain YW

Large ribosomal subunit protein uL30