IL_8RDV_038

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCCCAAAU*AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_038 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.0746

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8RDV|1|Z2|C|988
8RDV|1|Z2|C|989
8RDV|1|Z2|C|990
8RDV|1|Z2|C|991
8RDV|1|Z2|A|992
8RDV|1|Z2|A|993
8RDV|1|Z2|A|994
8RDV|1|Z2|U|995
*
8RDV|1|Z2|A|1135
8RDV|1|Z2|G|1136

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain IX

Large ribosomal subunit protein uL13

Chain PO

Large ribosomal subunit protein bL20