IL_8RDV_044
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8RDV|1|Z2|A|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_044 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1436
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8RDV|1|Z2|C|1027
8RDV|1|Z2|A|1028
8RDV|1|Z2|U|1029
8RDV|1|Z2|A|1030
8RDV|1|Z2|G|1031
8RDV|1|Z2|A|1032
8RDV|1|Z2|C|1033
8RDV|1|Z2|A|1034
8RDV|1|Z2|G|1035
*
8RDV|1|Z2|U|1092
8RDV|1|Z2|C|1093
8RDV|1|Z2|G|1094
8RDV|1|Z2|A|1095
8RDV|1|Z2|G|1096
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain GR
- Large ribosomal subunit protein uL6
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