IL_8RDV_045

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|U|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_045 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2925

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8RDV|1|Z2|G|1043
8RDV|1|Z2|U|1044
8RDV|1|Z2|U|1045
8RDV|1|Z2|G|1046
*
8RDV|1|Z2|C|1060
8RDV|1|Z2|A|1061
8RDV|1|Z2|U|1062
8RDV|1|Z2|C|1063

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein uL16