IL_8RDV_048

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGU*AGAG

Length

7 nucleotides

Bulged bases

8RDV|1|Z2|G|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_048 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0929

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

8RDV|1|Z2|C|1180
8RDV|1|Z2|G|1181
8RDV|1|Z2|U|1182
*
8RDV|1|Z2|A|1231
8RDV|1|Z2|G|1232
8RDV|1|Z2|A|1233
8RDV|1|Z2|G|1234

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain Kd

Large ribosomal subunit protein uL15

Chain PO

Large ribosomal subunit protein bL20