IL_8RDV_050

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8RDV|1|Z2|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_050 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0533

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8RDV|1|Z2|C|1192
8RDV|1|Z2|U|1193
8RDV|1|Z2|G|1194
8RDV|1|Z2|U|1195
8RDV|1|Z2|G|1196
8RDV|1|Z2|A|1197
8RDV|1|Z2|A|1198
8RDV|1|Z2|G|1199
*
8RDV|1|Z2|U|1218
8RDV|1|Z2|G|1219
8RDV|1|Z2|G|1220
8RDV|1|Z2|A|1221
8RDV|1|Z2|G|1222

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain PO

Large ribosomal subunit protein bL20