IL_8RDV_054
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_054 not in the Motif Atlas
- Homologous match to IL_5J7L_292
- Geometric discrepancy: 0.0598
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RDV|1|Z2|C|1335
8RDV|1|Z2|U|1336
8RDV|1|Z2|A|1337
8RDV|1|Z2|A|1338
8RDV|1|Z2|G|1339
*
8RDV|1|Z2|C|1360
8RDV|1|Z2|G|1361
8RDV|1|Z2|A|1362
8RDV|1|Z2|U|1363
8RDV|1|Z2|G|1364
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain Cl
- Large ribosomal subunit protein uL2
Coloring options: