IL_8RDV_059

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAU*AAAUA

Length

9 nucleotides

Bulged bases

8RDV|1|Z2|U|1542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_059 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0686

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RDV|1|Z2|U|1421
8RDV|1|Z2|U|1422
8RDV|1|Z2|A|1423
8RDV|1|Z2|U|1424
*
8RDV|1|Z2|A|1539
8RDV|1|Z2|A|1540
8RDV|1|Z2|A|1541
8RDV|1|Z2|U|1542
8RDV|1|Z2|A|1543

Current chains

Chain Z2

23S rRNA

Nearby chains