IL_8RDV_070

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUA*UUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_070 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.3229

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8RDV|1|Z2|U|1706
8RDV|1|Z2|G|1707
8RDV|1|Z2|A|1708
8RDV|1|Z2|U|1709
8RDV|1|Z2|A|1710
*
8RDV|1|Z2|U|1722
8RDV|1|Z2|U|1723
8RDV|1|Z2|G|1724
8RDV|1|Z2|A|1725
8RDV|1|Z2|G|1726

Current chains

Chain Z2

23S rRNA

Nearby chains