IL_8RDV_083

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

8RDV|1|Z2|G|2221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_083 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.1663

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8RDV|1|Z2|C|2067
8RDV|1|Z2|A|2068
8RDV|1|Z2|G|2069
*
8RDV|1|Z2|U|2219
8RDV|1|Z2|G|2220
8RDV|1|Z2|G|2221
8RDV|1|Z2|G|2222

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain WD

Large ribosomal subunit protein bL28