IL_8RDV_095

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|G|2559, 8RDV|1|Z2|A|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_095 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0542

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RDV|1|Z2|C|2493
8RDV|1|Z2|U|2494
8RDV|1|Z2|C|2495
*
8RDV|1|Z2|G|2557
8RDV|1|Z2|C|2558
8RDV|1|Z2|G|2559
8RDV|1|Z2|A|2560
8RDV|1|Z2|G|2561

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain aA

Large ribosomal subunit protein bL32