IL_8RDV_100
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUGAG*CAAGAUUAG
- Length
- 14 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|2763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_100 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0939
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8RDV|1|Z2|U|2619
8RDV|1|Z2|U|2620
8RDV|1|Z2|G|2621
8RDV|1|Z2|A|2622
8RDV|1|Z2|G|2623
*
8RDV|1|Z2|C|2757
8RDV|1|Z2|A|2758
8RDV|1|Z2|A|2759
8RDV|1|Z2|G|2760
8RDV|1|Z2|A|2761
8RDV|1|Z2|U|2762
8RDV|1|Z2|U|2763
8RDV|1|Z2|A|2764
8RDV|1|Z2|G|2765
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain IX
- Large ribosomal subunit protein uL13
Coloring options: