IL_8RDV_118

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAU*AGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_118 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1017

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8RDV|1|iN|G|173
8RDV|1|iN|A|174
8RDV|1|iN|A|175
8RDV|1|iN|U|176
*
8RDV|1|iN|A|274
8RDV|1|iN|G|275
8RDV|1|iN|C|276

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16

Chain QZ

Small ribosomal subunit protein uS17

Chain To

Small ribosomal subunit protein bS20